With the rise of Second Generation Sequencing (SGS) technology in recent years, forensic scientists have introduced and applied it to the field of forensic science, thus taking full advantage of its high throughput, fast sequencing speed and low cost, and greatly contributing to the development of forensic science and its application in case detection. This paper reviews the importance of second-generation sequencing technology in forensic genetic marker detection, starting from the history of the application of sequencing technology in forensic science. The current and potential applications of second-generation sequencing technology in forensic science are explored using the existing platforms from Illumina and Thermo Fisher Scientific Sequencing Technologies, which are relevant to forensic science research. For current research, these sequencing platforms can sequence genetic markers such as STR genetic markers, SNP genetic markers, mtDNA and mRNA. However, the optimisation of some of the genetic markers in sequencing kits, the introduction and validation of sequencing kits for Chinese populations, the development of a widely credible data collection standard, the optimisation of sequencing data analysis software, the interface with existing forensic genetics databases, and the ethical issues in the use of sequencing data are all important factors in determining whether second-generation sequencing technologies can replace (or complement) established PCR capillary tube sequencing technologies. The key to whether second-generation sequencing technology can replace (or complement) established PCR capillary techniques and be universally applied in criminal cases.